Faculty Research
The Research Faculty serve as leading educators and scholars producing advancing research across their fields, contributing to scientific publications and receiving both private and national research funding. The research team consists of those that facilitate Research and Teaching as well as Research Assistant Professors.
Research & Teaching
Name | Field of Interest | Research |
---|---|---|
Emrah Altindis | Understanding microbial mimicry in host-pathogen interactions, characterization of viral insulins in Iridoviridae, identification of novel viral hormones, exploring the role of the microbiome in Type 1 Diabetes autoimmunity | Microbiology & Endocrinology |
Anthony T. Annunziato | Molecular biology; Chromatin assembly and histone modifications in mammalian cells and fission yeast | Cell & Developmental Biology |
David Burgess | Cytokinesis, polarization of the cytoskeleton | Cell & Developmental Biology |
Thomas C. Chiles | B lymphocyte growth and survival, metabolomics, nanodiagnostics | Microbiology & Infectious Disease |
Peter Clote | RNA thermodynamics-based algorithms, protein and RNA structure, function and molecular evolution machine learning in bioinformatics | Computational Biology & Bioinformatics |
Jeffrey DaCosta | Ecology, behavior and evolution. | Ecology & Evolution |
Maitreyi Das | Cell signaling and polarization in cell shape establishment and cytokinesis | Cell and Developmental Biology |
Ismael Ben Fofana | HIV/AIDS vaccine, SIV/macaque model of AIDS, Phage Display and Antibody Engineering, Virus evolution and escape of antibody responses | |
Eric S. Folker | Cellular Organization. Mechanisms of nuclear movement and the role of nuclear movement in muscle development and disease pathogenesis. | Cell & Developmental Biology |
Marc-Jan Gubbels | The genetic and cell biological basis of Toxoplasma gondii cell division and host cell invasion | Microbiology & Infectious Disease |
Zoë Hilbert | Evolutionary infection biology, pathogenic fungi, host-pathogen interactions, evolution of microbial pathogens and animal immune responses | Microbiology and Infectious Disease |
Charles Hoffman | Glucose sensing, signal transduction, and transcriptional regulation in the fission yeast Schizosaccharomyces pombe | Microbiology & Infectious Disease |
Welkin Johnson | Retroviruses; Primate lentiviruses (HIV and SIV); Co-evolution of viruses and their hosts | Microbiology & Infectious Disease |
Christopher Kenaley | Vertebrate biomechanics, physiology, and systematics | Ecology, Evolution & Organismal Biology |
Phil Landrigan | Global Public Health; Children's Environmental Health; Occupational Health | Global Public Health |
Vicki Losick | Role and regulation of polyploidy in wound repair, aging, and disease in Drosophila | Cell & Developmental Biology |
Sarah McMenamin | Developmental biology, evolutionary development, post-embryonic coordination, thyroid hormone, craniofacial development, zebrafish | Cell & Developmental Biology |
Michelle Meyer | Computational biology, non-coding RNA discovery and validation, molecular evolution, RNA and protein structure | Computational Biology & Bioinformatics |
Babak Momeni | Systems biology of microbial communities; mathematical modeling of biological systems; microbial ecology | Computational Biology & Bioinformatics |
Thomas N. Seyfried | Gene-environmental interactions in epilepsy and brain cancer | Cell & Developmental Biology |
Kenneth C. Williams | Central nervous system macrophages, neuroAIDS, AIDS pathogenesis, monocyte/macrophage biology | Microbiology & Infectious Disease |
Visiting Scholars
Name | Field of Interest | Lab |
---|---|---|
Kurt Straif | Global Observatory on Pollution and Health. Society Cancer Epidemiology/Global Control of Cancer | Schiller Institute for Integrated Science |
Gherman Wiederschan | Glycobiology and Human Diseases | Seyfried Lab |
Research Professors
Name | Field of Interest | Research |
---|---|---|
Klemens Engelberg | Cell division in apicomplexan parasites | Gubbels Lab |
Purna Mukherjee | Molecular mechanisms of diet on brain tumors | Seyfried Lab |
James Whitney | Molecular virology, reservoir dynamics, and pre-clinical development. He has established primate models to examine both sexual transmission and SIV persistence on intensified antiretroviral therapy. | Whitney Lab |
Selected Publications
Unique Structure and Distinctive Properties of the Ancient and Ubiquitous Gamma-Type Envelope Glycoprotein
Viruses, January 2023
Victoria Hogan, Welkin E. Johnson
Dynamics of the gut microbiome, IgA response, and plasma metabolome in the development of pediatric celiac disease
Microbiome, January 2023
Khyati Girdhar, Yusuf Dogus Dogru, Qian Huang, Yi Yang, Vladimir Tolstikov, Amol Raisingani, Martina Chrudinova, Jaewon Oh, Kristina Kelley, Jonas F Ludvigsson, Michael A Kiebish, Noah W Palm, Johnny Ludvigsson, Emrah Altindis
Microbiome
2022
Use of a Fission Yeast Platform to Identify and Characterize Small Molecule PDE Inhibitors
Frontiers in Pharmacology, January 2022
Charles S. Hoffman
Monocytes in HIV and SIV Infection and Aging: Implications for Inflamm-Aging and Accelerated Aging
MDPI, February 2022
Zoey Wallis and Kenneth C. Williams
Editorial: Hormones and Life History Strategies
Frontiers, February 2022
Sarah K. McMenamin, Fedor Shkil, and Takashi Koyama
Genetic architecture facilitates then constrains adaptation in a host–parasite coevolutionary arms race
PNAS, February 2022
Claire N. Spottiswoode, Wenfei Tong, Gabriel A. Jamie, Katherine F. Stryjewski, Jeffrey M. DaCosta, Evan R. Kuras, Ailsa Green, Silky Hamama, Ian G. Taylor, Collins Moya, and Michael D. Sorenson
Toxoplasma gondii’s Basal Complex: The Other Apicomplexan Business End Is Multifunctional
Frontiers, April 2022
Marc-Jan Gubbels, David J. P. Ferguson, Sudeshna Saha, Julia D. Romano, Suyog Chavan, Vincent A. Primo, Cynthia Michaud, Isabelle Coppens and Klemens Engelberg
The effects of diet on prostate cancer outcomes
Nature, June 2022
Thomas N. Seyfried
APOBEC3F Constitutes a Barrier to Successful Cross-Species Transmission of Simian Immunodeficiency Virus SIVsmm to Humans
JVI, August 2022
Rayhane Nchioua, Dorota Kmiec, Amit Gaba, Christina M Stürzel, Tyson Follack, Stephen Patrick, Andrea Kirmaier, Welkin E Johnson, Beatrice H Hahn, Linda Chelico, Frank Kirchhoff
Association of the gut microbiome and metabolome with wheeze frequency in childhood asthma
Journal of Allergy and Clinical Immunology, August 2022
Kathleen Lee-Sarwar MD, MS, Sandra Dedrick PhD, Babak Momeni PhD, Rachel S. Kelly PhD, Robert S. Zeiger MD, PhD, George T. O’Connor MD, MS, Megan T. Sandel MD, Leonard B. Bacharier MD, Avraham Beigelman MD, MSCI, Nancy Laranjo, Diane R. Gold MD, MPH, Jessica Lasky-Su ScD, Augusto A. Litonjua MD, MPH, Yang-Yu Liu PhD, Scott T. Weiss MD, MS
Fungal and bacterial oxylipins are signals for intra- and inter-cellular communication within plant disease
Frontiers, September 2022
Marzia Beccaccioli, Nicoletta Pucci, Manuel Salustri, Marco Scortichini, Marco Zaccaria, Babak Momeni, Stefania Loreti, Massimo Reverberi and Valeria Scala
Nuclear movement in multinucleated cells
Development, October 2022
Jorel R. Padilla, Lillie M. Ferreira, Eric S. Folker
Weekly Flow: an Effective Organizational Tool for Structuring Biology Courses and Supporting Student Learning
Journal of Microbiology and Biology Education, October 2022
Heather Craig Olins
Probing the mutational landscape of the SARS-CoV-2 spike protein via quantum mechanical modeling of crystallographic structures
The National Academy of Sciences of the United States of America, November 2022
Marco Zaccaria, Luigi Genovese, William Dawson, Viviana Cristiglio, Takahito Nakajima, Welkin Johnson, Michael Farzan, Babak Momeni
Thyroid hormone shapes craniofacial bones during postembryonic zebrafish development
Evolution and Development, 2022
Stephanie Keer, Joshua D Storch, Stacy Nguyen, Mia Prado, Rajendra Singh, Luz Patricia Hernandez, Sarah K McMenamin
2021
2020
2019
2018
2017
Identification and characterization of a potent and biologically-active PDE4/7 inhibitor via fission yeast-based assays
Cellular Signalling, December 2017
de Medeiros AS, Wyman AR, Alaamery MA, Allain C, Douglas Ivey F, Wang L, Le H, Morken JP, Habara A, Le C, Cui S, Lerner A, Hoffman CS
In Vivo Behavior of the Tandem Glycine Riboswitch in Bacillus subtilis
American Society for Microbiology, October 2017
Arianne M. Babina, Nicholas E. Lea, Michelle M. Meyer
Kif2 localizes to a subdomain of cortical endoplasmic reticulum that drives asymmetric spindle position
Nature Communications, October 2017
Vlad Costache, Celine Hebras, Gerard Pruliere, Lydia Besnardeau, Margaux Failla, Richard R. Copley, David Burgess, Janet Chenevert and Alex McDougall
Differential Roles for Inner Membrane Complex Proteins across Toxoplasma gondii and Sarcocystis neurona Development
September/October 2017
Dubey R, Harrison B, Dangoudoubiyam S, Bandini, Cheng K, Kosber A, Aqop-Nersesian C, Howe DK, Samuelson J, Ferguson DJP, Gubbels MJ
MicroCT-based skeletal phenomics in zebrafish reveals virtues of deep phenotyping at the whole-organism scale
eLIFE, September 2017
Hur M, Gistelinck CA, Huber P, Lee J, Thompson MH, Monstad-Rios AT, Watson CJ, McMenamin SK, Willaert A, Parichy DM, Coucke P, Kwon RY
A biorobotic adhesive disc for underwater hitchhiking inspired by the remora suckerfish
Science Robotics, September 2017
Yueping Wang, Xingbang Yang, Yufeng Chen, Dylan K. Wainwright, Christopher P. Kenaley, Zheyuan Gong, Zemin Liu, Huan Liu, Juan Guan, Tianmiao Wang, James C. Weaver, Robert J. Wood, and Li Wen
MAGenTA: a Galaxy implemented tool for complete Tn-Seq analysis and data visualization
Bioinformatics, September 2017
Katherine Maia McCoy, Margaret L. Antonio and Tim van Opijnen
Analysis of SIVmac Envelope-Specific Antibodies Selected Through Phage Display
AIDS Research and Human Retroviruses, August 2017
Ita Sergio, Agostinho Mayara R., Sullivan Katherine, Yub Han Seung, Akleh Rana, Johnson Welkin E., and Fofana Ismael Ben F.
Emery–Dreifuss muscular dystrophy–linked genes and centronuclear myopathy–linked genes regulate myonuclear movement by distinct mechanisms
Molecular Biology of the Cell, August 2017
Mary Ann Collins, Torrey R. Mandigo, Jaclyn M. Camuglia, Gabriella A. Vazquez, Alyssa J. Anderson, Christine H. Hudson, John L. Hanron, and Eric S. Folker
Antibiotics Disrupt Coordination between Transcriptional and Phenotypic Stress Responses in Pathogenic Bacteria
Cell Reports, August 2017
Paul A. Jensen, Zeyu Zhu, Tim van Opijnen
Modeling Microbial Communities: A Call for Collaboration between Experimentalists and Theorists
Processes, June 2017
Marco Zaccaria, Sandra Dedrick and Babak Momeni
Co-registered Geochemistry and Metatranscriptomics Reveal Unexpected Distributions of Microbial Activity within a Hydrothermal Vent Field
Frontiers in Microbiology, June 2017
Olins HC, Rogers DR, Preston C, Ussler W 3rd, Pargett D, Jensen S, Roman B, Birch JM, Scholin CA, Haroon MF, Girguis PR.
Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions
eLIFE, March 2017
Babak Momeni, Li Xie, Wenying Shou
The microtubule plus-end-tracking proteinTACC3 promotespersistent axon outgrowth and mediates responses to axonguidance signals during development
Neural Development, February 2017
Burcu Erdogan, Garrett M. Cammarata, Eric J. Lee, Benjamin C. Pratt, Andrew F. Franci, Erin L. Rutherford and Laura Anne Lowery
2016
New tools to analyze overlapping coding regions
BMC Bioinformatics, December 2016
Amir H. Bayegan, Juan Antonio Garcia-Martin and Peter Clote
An Intact Retroviral Gene Conserved in Spiny-Rayed Fishes for over 100My
Molecular Biology and Evolution, November 2016
Jamie E. Henzy, Robert J. Gifford, Christopher P. Kenaley, and Welkin E. Johnson
Membrane skeletal association and post-translational allosteric regulation ofToxoplasma gondii GAPDH1
Molecular Microbiology, November 2016
Rashmi Dubey, Bart L. Staker, Ian T. Foe, Matthew Bogyo, Peter J. Myler, Huan M. Ngo and Marc-Jan Gubbels
Anti-inflammatory effects of novel barbituric acid derivatives in T lymphocytes
International Immunopharmacology, September 2016
Chenjia Xu, Arlene R. Wyman, Manal A. Alaamery, Shannon A. Argueta, F. Douglas Ivey, John A. Meyers, Adam Lerner, Tricia H. Burdo, Timothy Connolly, Charles S. Hoffman, Thomas C. Chiles
Follow the Sulfur: Using Yeast Mutants to Study a Metabolic Pathway
CourseSource, September 2016
Clare M. O'Connor
Strain Dependent Genetic Networks for Antibiotic-Sensitivity in a Bacterial Pathogen with a Large Pan-Genome
PLOS Pathogens, September 2016
Tim van Opijnen, Sandra Dedrick, Jose Bento
A MORN1-associated HAD phosphatase in the basal complex is essential for Toxoplasma gondii daughter budding
Cell Microbiology, August 2016
Klemens Engelberg, F. Douglas Ivey, Angela Lin, Maya Kono, Alexander Lorestani, Dave Faugno-Fusci, Tim-Wolf Gilberger, Michael White and Marc-Jan Gubbel
Nucleus-dependent sarcomere assembly is mediated by the LINC complex
MBoC, August 2016
Alexander Auld and Eric S. Folker
Phylogeny and History of the Lost SIV from Crab-Eating Macaques: SIVmfa
PLOS ONE, July 2016
Kevin R. McCarthy, Welkin E. Johnson, Andrea Kirmaier
Shielded Coaxial Optrode Arrays for Neurophysiology
Frontiers in Neuroscience, June 2016
Jeffrey R. Naughton, Timothy Connolly, Juan A. Varela, Jaclyn Lundberg, Michael J. Burns, Thomas C. Chiles, John P. Christianson and Michael J. Naughton
A Brief History of Schizosaccharomyces pombe Research: A Perspective Over the Past 70 Years
Genetics Perspectives, June 2016
Peter A. Fantes and Charles S. Hoffman
Phylogenetic sleuthing reveals pair of paralogous genes
eLIFE, May 2016
Jamie E Henzy and Welkin E Johnson
Tracking interspecies transmission and long-term evolution of an ancient retrovirus using the genomes of modern mammals
eLIFE, March 2016
William E Diehl, Nirali Patel, Kate Halm, Welkin E Johnson
2015
Co-evolution of Bacterial Ribosomal Protein S15 with Diverse mRNA Regulatory Structures
PLoS Genetics, December 2015
Betty L. Slinger, Hunter Newman, Younghan Lee, Shermin Pei, Michelle M. Meyer
Compartmentalized Toxoplasma EB1 bundles spindle microtubules to secure accurate chromosome segregation
Molecular Biology of the Cell, December 2015
Chun-Ti Chen, Megan Kelly, Jessica de Leon, Belinda Nwagbara, Patrick Ebbert, David J. P. Ferguson, Laura Anne Lowery, Naomi Morrissette, and Marc-Jan Gubbels
The EVOS FL Cell Imaging System: A key component of an imaging core facility
BIOPROBES 72, November 2015
Bret L. Judson
An Ancient Yeast for Young Genetics: A Primer on the Schizosaccharomyces pombe Model System
Genetics Primer, October 2015
Charles S. Hoffman, Valerie Wood, and Peter A. Fantes
RNAiFold 2.0: a web server and software to design custom and Rfam-based RNA molecules
Nucleic Acids Research, July 2015
Juan Antonio Garcia-Martin, Ivan Dotu and Peter Clote
TIPsy tour guides: how microtubule plus-end tracking proteins (+TIPs) facilitate axon guidance
Frontiers in Cellular Neuroscience, June 2015
Elizabeth A. Bearce, Burcu Erdogan and Laura Anne Lowery
The Fork in the Road: Histone Partitioning During DNA Replication
Genes, June 2015
Anthony T. Annunziato
Xenopus TACC1 is a Microtubule Plus-End Tracking Protein that can Regulate Microtubule Dynamics During Embryonic Development
Cytoskeleton, May 2015
Christopher M. Lucaj, Matthew F. Evans, Belinda U. Nwagbara, Patrick T. Ebbert, Charlie C. Barker, Joseph G. Volk, Andrew F. Francl, Sean R, Ruvolo, and Laura Anne Lowery
Sampled ensemble neutrality as a feature to classify potential structured RNAs
BMC Genomics, February 2015
Sherman Pei, Jon S Anthony and Michelle Meyer
Nuclear export of curtaneous HPV8 E7 oncoprotein is mediated by a leucine-rich nuclear export signal via a CRM1 pathway
Virology, January 2015
Zeynep Onder, Vivian Chang, Junona Moroianu